#include <BoundaryScrapingDiagnostics.H>

Inheritance diagram for BoundaryScrapingDiagnostics:

Public Member Functions
	BoundaryScrapingDiagnostics (int i, const std::string &name, DiagTypes diag_type)

Public Member Functions inherited from Diagnostics
	Diagnostics (int i, std::string name, DiagTypes diag_type)

virtual	~Diagnostics ()

	Diagnostics (Diagnostics const &)=delete

Diagnostics &	operator= (Diagnostics const &)=delete

	Diagnostics (Diagnostics &&)=default

Diagnostics &	operator= (Diagnostics &&)=default

void	ComputeAndPack ()

void	InitData (const MultiParticleContainer &mpc)

void	InitDataBeforeRestart ()

void	InitDataAfterRestart (const MultiParticleContainer &mpc)

virtual void	InitializeFieldFunctorsRZopenPMD (int lev)

virtual void	InitializeParticleFunctors ()

void	NewIteration ()

void	FilterComputePackFlush (int step, bool force_flush=false)

bool	DoDumpLastTimestep () const

int	getnumbuffers () const

virtual amrex::Real	gettlab (int i_buffer)

virtual void	settlab (int i_buffer, amrex::Real tlab)

virtual int	get_buffer_k_index_hi (int i_buffer)

virtual void	set_buffer_k_index_hi (int i_buffer, int kindex)

virtual amrex::Real	get_snapshot_domain_lo (int i_buffer, int idim)

virtual amrex::Real	get_snapshot_domain_hi (int i_buffer, int idim)

void	setSnapshotDomainLo (int i_buffer, int idim, amrex::Real domain_lab_lo)

void	setSnapshotDomainHi (int i_buffer, int idim, amrex::Real domain_lab_hi)

virtual int	get_flush_counter (int i_buffer)

virtual void	set_flush_counter (int i_buffer, int flush_counter)

virtual int	get_last_valid_Zslice (int i_buffer)

virtual void	set_last_valid_Zslice (int i_buffer, int last_valid_Zslice)

virtual int	get_snapshot_full_flag (int i_buffer)

virtual void	set_snapshot_full (int i_buffer, int snapshot_full)

Private Member Functions
void	ReadParameters ()

void	Flush (int i_buffer, bool) override
	Flush data to file.

bool	DoDump (int step, int i_buffer, bool force_flush=false) override
	Return whether to dump data to file at this time step. (i.e. whether to call Flush)

bool	DoComputeAndPack (int step, bool force_flush=false) override

void	InitializeBufferData (int i_buffer, int lev, bool restart=false) override

void	InitializeFieldFunctors (int lev) override

void	InitializeParticleBuffer (const MultiParticleContainer &mpc) override

Private Attributes
utils::parser::IntervalsParser	m_intervals

Additional Inherited Members
Public Attributes inherited from Diagnostics
DiagTypes	m_diag_type

Protected Member Functions inherited from Diagnostics
bool	BaseReadParameters ()

void	InitBaseData ()

virtual void	DerivedInitData ()

virtual void	PrepareBufferData ()

virtual void	UpdateBufferData ()

virtual void	PrepareFieldDataForOutput ()

virtual void	PrepareParticleDataForOutput ()

virtual void	MovingWindowAndGalileanDomainShift (int step)

Protected Attributes inherited from Diagnostics
int	m_verbose = 2

std::string	m_diag_name

std::string	m_file_prefix

int	m_file_min_digits = 6

int	m_diag_index

amrex::Vector< std::string >	m_varnames

amrex::Vector< std::string >	m_varnames_fields

amrex::Vector< std::string >	m_pfield_varnames

std::vector< std::string >	m_pfield_species

std::vector< bool >	m_pfield_do_average

std::vector< int >	m_pfield_species_index

std::vector< std::string >	m_pfield_strings

std::vector< bool >	m_pfield_dofilter

std::vector< std::string >	m_pfield_filter_strings

bool	m_dump_last_timestep = true

std::string	m_format = "plotfile"

int	m_already_done = false

std::unique_ptr< FlushFormat >	m_flush_format

amrex::Vector< amrex::Vector< amrex::MultiFab > >	m_mf_output

amrex::Vector< amrex::Vector< amrex::MultiFab > >	m_sum_mf_output

amrex::Vector< amrex::Vector< amrex::Geometry > >	m_geom_output

int	nlev

int	nmax_lev

int	nlev_output

std::vector< std::string >	m_output_species_names

std::vector< std::string >	m_all_species_names

amrex::Vector< amrex::Vector< ParticleDiag > >	m_output_species

amrex::Vector< amrex::Vector< std::unique_ptr< ComputeDiagFunctor > > >	m_all_field_functors

amrex::IntVect	m_crse_ratio = amrex::IntVect(1)

amrex::Vector< amrex::Real >	m_lo

amrex::Vector< amrex::Real >	m_hi

int	m_num_buffers

amrex::Vector< int >	m_rho_per_species_index

amrex::Vector< int >	m_T_per_species_index

amrex::Vector< amrex::Vector< std::unique_ptr< PinnedMemoryParticleContainer > > >	m_particles_buffer

amrex::Vector< std::unique_ptr< ComputeParticleDiagFunctor > >	m_all_particle_functors

amrex::Vector< amrex::Vector< int > >	m_totalParticles_in_buffer

amrex::Vector< amrex::RealBox >	m_snapshot_domain_lab

Detailed Description

collect the particles that are absorbed at the embedded boundary, throughout the simulation

Constructor & Destructor Documentation

◆ BoundaryScrapingDiagnostics()

BoundaryScrapingDiagnostics::BoundaryScrapingDiagnostics	(	int	i,
		const std::string &	name,
		DiagTypes	diag_type )

Constructor

Parameters

i	index of diagnostics in MultiDiagnostics::alldiags
name	diagnostics name in the inputs file
diag_type	diagnostics type (e.g., full, back-transformed, time-averaged, etc.)

Member Function Documentation

◆ DoComputeAndPack()

bool BoundaryScrapingDiagnostics::DoComputeAndPack	(	int	step,
		bool	force_flush = false )

overrideprivatevirtual

Return whether to pack field data in output buffers at this time step

This is not used for BoundaryScrapingDiagnostics: no field to output

Implements Diagnostics.

◆ DoDump()

bool BoundaryScrapingDiagnostics::DoDump	(	int	step,
		int	i_buffer,
		bool	force_flush = false )

overrideprivatevirtual

Return whether to dump data to file at this time step. (i.e. whether to call Flush)

Parameters

[in]	step	current time step
[in]	i_buffer	index of the boundary buffer used (e.g. upper/lower boundary, EB boundary)
[in]	force_flush	if true, return true for any step

Implements Diagnostics.

◆ Flush()

void BoundaryScrapingDiagnostics::Flush	(	int	i_buffer,
		bool	)

overrideprivatevirtual

Flush data to file.

Implements Diagnostics.

◆ InitializeBufferData()

void BoundaryScrapingDiagnostics::InitializeBufferData	(	int	i_buffer,
		int	lev,
		bool	restart = false )

overrideprivatevirtual

Initialize buffers that contain field data

This is not used for BoundaryScrapingDiagnostics: no field to output

Implements Diagnostics.

◆ InitializeFieldFunctors()

void BoundaryScrapingDiagnostics::InitializeFieldFunctors ( int lev )

overrideprivatevirtual

Initialize functors that point to the fields requested by the user.

This is not used for BoundaryScrapingDiagnostics: no field to output

Implements Diagnostics.

◆ InitializeParticleBuffer()

void BoundaryScrapingDiagnostics::InitializeParticleBuffer ( const MultiParticleContainer & mpc )

overrideprivatevirtual

Initialize the diagnostics by pointing to the ParticleBoundaryBuffer that correspond to the species requested by the user.

Parameters

[in] mpc a constant reference to the multi-particle container.

Implements Diagnostics.

◆ ReadParameters()

void BoundaryScrapingDiagnostics::ReadParameters ( )

private

Read relevant parameters for BoundaryScraping

Member Data Documentation

◆ m_intervals

utils::parser::IntervalsParser BoundaryScrapingDiagnostics::m_intervals

private

Determines timesteps at which the particles are written out

The documentation for this class was generated from the following files:

/home/docs/checkouts/readthedocs.org/user_builds/warpx/checkouts/6102/Source/Diagnostics/BoundaryScrapingDiagnostics.H
/home/docs/checkouts/readthedocs.org/user_builds/warpx/checkouts/6102/Source/Diagnostics/BoundaryScrapingDiagnostics.cpp

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ BoundaryScrapingDiagnostics()

Member Function Documentation

◆ DoComputeAndPack()

◆ DoDump()

◆ Flush()

◆ InitializeBufferData()

◆ InitializeFieldFunctors()

◆ InitializeParticleBuffer()

◆ ReadParameters()

Member Data Documentation

◆ m_intervals